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1. You can – essentially each wallet that you own – their recovery phrase would have to be entered into the Ledger each time, but I’d recommend trying to set up all these accounts through the recovery phrase that you were given by Ledger since this is more secure (assuming you didn’t save your phrase on your desktop/mobile/any networked device)
2. So the recovery phrase that you generate for the first time via your Ledger will be the only phrase you need to worry about it as it will be the same one used for all your coins and tokens. If you’ve installed the NEAR app and connected the Ledger to the NEAR wallet (which is one of the options they provide), you don’t need to input anything else.
Also remember, the ledger app on your on your desktop/mobile will never ask you for your recovery phrase and neither will any Ledger employee. If you’ve been receiving DMs, they’re all scams.